GenePattern:一个强大的基因组学分析平台 - 生物信息 - 生物秀
标题: GenePattern:一个强大的基因组学分析平台
摘要: [GenePattern:一个强大的基因组学分析平台]GenePattern是一个强大的基因组学分析平台，该平台整合了大量的基因表达分析、蛋白质组学(Proteomics)分析、SNP分析、流式细胞分析、RNA-seq数据分析以及一些常规的生物信息(bioinformation)学分析工具。
以下是官方介绍：
GenePattern is a powerfu…… [关键词:基因组学 表达分析 基因 蛋白质组学 生物信息 数据分析 生物信息学]……
GenePattern是一个强大的基因组学分析平台，该平台整合了大量的基因表达分析、蛋白质组学(Proteomics)分析、SNP分析、流式细胞分析、RNA-seq数据分析以及一些常规的生物信息(bioinformation)学分析工具。
以下是官方介绍：
GenePattern is a powerful genomic analysis platform that provides access to more than 150 tools for gene expression analysis, proteomics, SNP analysis, flow cytometry, RNA-seq analysis, and common data processing tasks. A web-based interface provides easy access to these tools and allows the creation of multi-step analysis pipelines that enable reproducible in silico research.
相关网站地址：http://www.broadinstitute.org/cancer/software/genepattern/
相关热词：
..........
生物秀是目前国内最具影响力的生物医药门户网站之一，致力于IT技术和BT的跨界融合以及生物医药领域前沿技术和成功商业模式的传播。为生物医药领域研究人员和企业提供最具价值的行业资讯、专业技术、学术交流平台、会议会展、电子商务和求职招聘等一站式服务。
官方微信号：shengwuxiu
电话：021-君，已阅读到文档的结尾了呢~~
GenePattern flow cytometry suite
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GenePattern flow cytometry suite
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3秒自动关闭窗口genePattern data preprocessing
genePattern data preprocessing
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preprocess data set using genePattern preProces service, the input &data /> should be in genePattern STATML format. Configuration parameters can be adjusted by changing the default preprocess data set using genePattern preProces service, the input &data /> should be in genePattern STATML format.preprocess data set using genePattern preProces service, the input &data /> should be in genePattern STATML format. Configuration parameters can be adjusted by changing the string constants.
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Workflow Components
Authors (2)
University of Chicago and Argonne National Lab
http://www.mcs.anl.gov/~wtan/
University of Chicago and Argonne National Lab
Titles (1)
genePattern data preprocessing
Descriptions (3)
preprocess data set using genePattern preProces service, the input &data/& should be in genePattern STATML format. Configuration parameters can be adjusted by changing the default
preprocess data set using genePattern preProces service, the input &data/& should be in genePattern STATML format.
preprocess data set using genePattern preProces service, the input &data/& should be in genePattern STATML format. Configuration parameters can be adjusted by changing the string constants.
Dependencies (0)
Inputs (1)
Description
the raw data element (&data/&) to be preprocessed. &data/& should be in STATML format.
Processors (18)
Description
xmlsplitter
PreprocessDatasetParameterSetXML1
xmlsplitter
preProcessTestData
Wsdlhttp://node255.broadinstitute.org:6060/wsrf/services/cagrid/PreprocessDatasetSTATMLService?wsdlWsdl OperationperformAnalysis
parametersXML12
xmlsplitter
parametersXML11
xmlsplitter
preprocessDatasetParameterSetXML
xmlsplitter
stringconstant
columnThreshold
stringconstant
filterFlag
stringconstant
Valuefalse
logBaseTwo
stringconstant
Valuefalse
maxSigmaBinning
stringconstant
stringconstant
stringconstant
Value100.0
numberOfColumnsAboveThreshold
stringconstant
numExclude
stringconstant
preprocessingFlag
stringconstant
Valueno-disc-or-norm
probabilityThreshold
stringconstant
stringconstant
Beanshells (0)
Outputs (1)
Description
preProcessedData
Datalinks (19)
dataXML:Data
threshold:value
PreprocessDatasetParameterSetXML1:threshold
numExclude:value
PreprocessDatasetParameterSetXML1:numExclude
preprocessingFlag:value
PreprocessDatasetParameterSetXML1:preprocessingFlag
logBaseTwo:value
PreprocessDatasetParameterSetXML1:logBaseTwo
filterFlag:value
PreprocessDatasetParameterSetXML1:filterFlag
minDelta:value
PreprocessDatasetParameterSetXML1:minDelta
ceiling:value
PreprocessDatasetParameterSetXML1:ceiling
minChange:value
PreprocessDatasetParameterSetXML1:minChange
columnThreshold:value
PreprocessDatasetParameterSetXML1:columnThreshold
maxSigmaBinning:value
PreprocessDatasetParameterSetXML1:maxSigmaBinning
probabilityThreshold:value
PreprocessDatasetParameterSetXML1:probabilityThreshold
numberOfColumnsAboveThreshold:value
PreprocessDatasetParameterSetXML1:numberOfColumnsAboveThreshold
parametersXML11:output
preProcessTestData:parameters
preProcessTestData:parameters
parametersXML12:input
dataXML:output
parametersXML11:data
preprocessDatasetParameterSetXML:output
parametersXML11:preprocessDatasetParameterSet
PreprocessDatasetParameterSetXML1:output
preprocessDatasetParameterSetXML:PreprocessDatasetParameterSet
parametersXML12:Data
preProcessedData
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preprocess data before it is sent to any GenePattern services.
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