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Join Legend
Serious alignment problem, requires review.
Zero, or more than one, overlaps
Half dove-tail &50 bp
Alignment identity &98%
Alignment length &50 bp
&2 gaps, each gap &25 bp, not marked as an SSR
&0 gaps, each gap &50 bp, not marked as an SSR
&0 gaps, each gap &500 bp, not marked as an SSR
&0 gaps, each gap &500 bp, marked as an SSR
Minor alignment problem.
Exactly one overlap
Half dove-tail &0 bp and <=50bp
Alignment identity &99.1%
Alignment length &2000 bp
&0 gaps, each gap &25 bp, not marked as an SSR
&0 gaps, each gap &50 bp, not marked as an SSR
&0 gaps, each gap &500 bp, not marked as an SSR
&0 gaps, each gap &500 bp, marked as an SSR
Excellent alignment, meets all defined criteria.
Exactly one RuleInfo
Half dove-tail &=0 bp
Alignment identity &=99.1%
Alignment length &=2000 bp
&=0 gaps, each gap &25 bp, not marked as an SSR
&=0 gaps, each gap &50 bp, not marked as an SSR
&=0 gaps, each gap &500 bp, not marked as an SSR
&=0 gaps, each gap &500 bp, marked as an SSR
Certificate submitted, not yet approved.
Certificate submitted and approved.
Valid, contained clone
Join not evaluated due to one accession not being finished.
Curator Links
Alignment for AC and AC
Mismatches = 0, Gaps = 0, Length = 19500
Percent identity = 100%
Score = 3.866e+04 bits (19500), Expect = 0
3 BAC and 2 Fosmid bridging clones.
3 BAC and 2 Fosmid concordant clones.
0 BAC and 0 Fosmid discordant clones.
gatcttcacttctctgagaaaggcataaccaagaacttttcctggtgttcctgttgtccc 184423
tggtccctcctgcttgcttgtgctgaggctgaggcctggctgtctctgctaagtagtgct 184483
attgatgctgattcctgtttgctatctggactctatcaaactagactcctggtttatctg 184543
tgaagtgtttgcaagtgcactgagctgcagctgactcctgtgaactgaactgccaatttc 184603
ttgacaacccagatgggagttgctccaaagaacctttctaaacaggtccacttcttatgt 184663
atcctttcttttccactacctctggtgggtgatgggctaaaagggaggttaaaacattta 184723
agaatcatcattaaagataactttttaaagtttagttccattttttaatttggtatttca 184783
tgctgctctaagttaagagaaaaacattttaaattattaacataaattcagccactcaca 184843
ttgctctgacacattatttgatttgaatgttgtaccccatccctctccaacgagtgcctg 184903
acaccagccaggaaacagcttagggtggttagaggaaacagaacccagtctgagcaccta 184963
ggcatgatgacattgggcctcagaaagacaggtgcaaaccccaggtgcttgttcagcaag 185023
tgtttcccggacaaacatagaccttcatgggccatgacctgccacgcagagaagtttcca 185083
cttcgcaccatgaaacaaactactaaattgttcgtagactgggagtcggatctggggaaa 185143
tcaaatcaggcaggtgccattgccattaacccatgtcccagctcaacagagaagagaact 185203
ccaggggtctgtaagcctctgttttataggtaaagttggcccctggatctggaagagcat 185263
ccttaccctgaaggcaggcacaaatgtccccacacaaataagttgaaaatgtctgtgcct 185323
ttctctgttggacttatctaggtgacatgccaagaggagaagatgtggtgtctctgaggt 185383
cattgctgaatgttataggaaattggacatggtggctcatgtctgttatttctgaactta 185443
ggggccaaggcaagaggatcatcagtggtccaaggtcaattcaggctacacagtgacctt 185503
gaggctggactgtgctatagaacaacctccttctaacaaaactgaaatgttccaggtggt 185563
taggaatccagtcgagcagtgttcagatcaatgtgtgtttccatccacctcttcctcttt 185623
ccctcattacaaattattttcctagtatggaaaaatataaaaatgagaactcaagaattt 185683
cacactgtgagttgctttcatctagactactaaaaccttggtttgcttttggttcttctt 185743
tggtggtgggggcagggtcaagaagacatagggggttttgcttgtcattggaaatgaaat 185803
atctatctaaaataagaacttcattctcatttgtcatgtcattcaatcttgctaattaaa 185863
atctgtaagcatgtctttattattgtattttccacctcaggcagaacattagggttaaga 185923
gttgttcaagtgagggcctggaagagccagtttcaagcaggtctgcctgtctgccaagct 185983
gtcagcatcctcagagaaaggctcttgtttcctgtagcagggttcaaaagtattctccgc 186043
tggactcaaacactaaacaacgcctaaacttcaggtgtttttaaccttcccaatgctaca 186103
accatttaacacagttcctcatgctatactgactcccaatcataaaatttttccactgct 186163
acttcatagccataatattgctactgttatgaatcataatgtaaatatctgttatacagg 186223
atatctgttatgtaacccccaaaaagggttgagacccacaggttgacctaaaaaacttct 186283
gacctaaagagatgatttacccaacaatttggccacaaccagatgtagaaacatctttga 186343
acagtgaagcaagcacaaaggcgaacagaggagagagggaactagaaatgctgcctttgc 186403
cctggggaagccaggaagttaaacatttcttcattgggaaggaacttgtcctgtgtgtcc 186463
tctctctgcctgcttttccaatgtaggtccgggcacactggaccagagggatgactctaa 186523
gtctagattgaacctcttgaaacttaaaggcagaaggaaacctgccatcctgcctccagc 186583
cccatgagaatgctggtgatatttgagtagccagaagatcatcgtagacaaaagtgcttc 186643
tactcttctgtttcctggcccagggcttcccccttgccctcctagcaatggacccatttc 186703
taggatcaaccatgttctattgcgtcatttttttttctgttccatttggctaacagtgac 186763
tcagaacagttgaacaacccccttttctctgaacaatctgaagctcatcctgcaagcagt 186823
ttctctctgccccttcattctgggtagccctggggtttccccttttcttgaattctagta 186883
atgaatggttgccgagaaagcaggtgattcgatgctgtcatgaaccgaactatgggtaag 186943
aagccctgtgacatcagctgctgctcagtgcttgcggccagcactctgtcatctgtagca 187003
tcatggtgcagtgttctccactgatgcttttcagagtcagagaaacacagggtcttagag 187063
gcacatgtgatacatgctcaaaatgcatgctcgttcctttaaaaacactttttaaaaatt 187123
ggacagtttttatttatataagcaacatttctctctctcatcccctactctctcccatta 187183
acaccctccttcttaccaagtcctttcctactgtcatgtcttccttttgtgtgtgcaaca 187243
ctgattttaataaaagttaccttcttgagcatgagtgaggggttattttagtaaacaagg 187303
tcgatttattagtgactacaccactaaagacagaaccacccccttgcgaattctgtttgg 187363
ggccttttttcttactaagatttttctcactgacccaaatcccttttgccaggggacaga 187423
gaaatgaatagtgggtggtaaatattatctggttcatgtatgtagccgggacacgaccca 187483
caggaccatgatgatggttctaggtgaggtgaatttgcccaggtccacccagaacacact 187543
gtaggtattggacagctgacggctggggacgtagctcagtggtggagcttcagctcagta 187603
tgtgagagatgctgaggttcagtcttgagaccaagaaagaaataaaaaccagctgaatgc 187663
tgtagaccctctgggtccctgtgtctgcgtggaatgggtctctcgacgcaggtgggcaaa 187723
gtgtggatgaatgacaaacagacacacacaggagaggttgtgtggaatctgagtgtaatt 187783
ttcgaattgagcttcagactttttatgcagaggacaataaggaagttgggtgacatattc 187843
atatttgcaaggtacaattgaggtaacgggaatgttacataaaacagaggaatgcaaaca 187903
caaaaggtctaatgggaaccacctgggatagaatacattgataacagctgggatcaacaa 187963
gggctccacctaagattcactaatcttagaagccagggtcaagggcttcgcgcccttgcc 188023
atagttcctattttagtctcttgtatagtccaccttccccttaggccattgtaaatacat 188083
gtgtatgggtgtaactctgctatagttctaagtatctattctgatttctcctttggtctg 188143
aaacttccttcttccttagtgagggtaaattcctgtgtaagggagtgacttagcttttac 188203
aatcttactgaattccaagcccttgatcttggtcaaggacattctaggactgttggaaca 188263
ctggcggaaggctttagccatgtcagaattcaattttaaaaagcacttataataggaaaa 188323
tactgaaagagagcacgtggatccatacactagactaacatggtaatggaacgcgggaat 188383
gaaaaattaatgtatgggtagagaatgctagactccaggaggagagcttccttgaaactc 188443
ttttgcctcatgagtgacttttaagcctttcggcttgtccagctgactgaccggagagca 188503
tagcagctgaacagaaactgactttctgggctccgatgggtcagtcagagtcttctctca 188563
aaaaaaaaagaaaaagaaactcctaactcccttgattcctgccaggctttgaaatcattt 188623
gttttcagtgctttgatcttcagatcttaatcttaaagttatttaaattccataccctag 188683
ttttctcaactatatattggagataataataaataataataataataattcttacttgta 188743
gttagagaagatccagaaatttaaatatgaaaagctcccacctatatcagtgtttgaccc 188803
acagcaaatcctctataaataataatgtaatgctgagtgaagtttttgctctaggttgag 188863
aagttgctggaatgcagtaatattacaacctacccgggagacgaaagtgcagcctttgaa 188923
aagacctatgccttgacctggaaaggtcagcagtggctgtcatgaaccatctcaaatcac 188983
atgaacgccactccactatgaagatttataactgcggctgctccagaaggaagtctgtag 189043
agctgagactccaccaaccttacttcccgcctatttgtcttctgttgcaaagccaggcat 189103
gctgtagatgcttggtagagttgacactgaaggtcaaaacgtttggatcattaccaagaa 189163
aatgcagcatcagtttttaagagggccttgctttctagcctgaggtagcttcaaatttat 189223
ggtcttcctgcctctgcccctagagtgctggggtaacaggtgtgtgccatcccatctggt 189283
tcatctggttctgaaagggctacatttgcttggccatgtagagttggtttttattgtttt 189343
ttgtttttttttttttttttgtagcatgacacaaattgatttcagacaccagatttctag 189403
tatctcagtgtttaccatgatccaagtgttcttagtacacatgaaagttatattgtttaa 189463
aactattcctatttactgatcctgtgggattattccctgaggtacacaaatatgcatgta 189523
ctccctcaagacagggcaccaatgacagactagaacattgatttcaccatgccaaggacc 189583
tgccagtctctgcctcccatgtgcaggggtggacgtcatgccaccatacctgaaaagtca 189643
gatggttcttagtgattagtctgttaatgtattatcttggttgacttttttaaaggttga 189703
agtattcatctgctccatggttaaacctcacttagggaaggggcatcactgtttttatat 189763
gatgctcggtttggcttgctcttactgaggagttttacaactagataatgtctgctttgg 189823
tgtcaaggcaatgctggccacaaagagagtaacaaattgctctcacacgctccagtttct 189883
tttgaagagtgtgagatgtatagatagtaattcctcaaatgtcttgtagaattcttctgc 189943
gaagccatctgatctaagatgttttaacttgggggaggttttgactgtgactcaacctcc 190003
ccgatccaatttagataattcatatgtgtctggaaaattatgtttcatctaactttttga 190063
catgcatttgtttaataacagttccttattcttttgaatagactttttggagaagattta 190123
gagtcacagaaaatttcaggaaatgcgactgggatttcctatgctctgtctctcctcagc 190183
catgtacactattattattattattattattattattactattactattattactaatag 190243
ccctctgctgttgtggtctactctttggaaggatgcacccatactgtttgtgctagatta 190303
cagccttcagttatgcacccagacatagatgtgatctctcattgggaaggccttttgcct 190363
cttttgtttttttattactataatcttaaagggtttgccccttttcccaaaagagaattt 190423
tgattctcttctcatttccttgtgcatttctttagctttaattactttttacatttattt 190483
ctttatctctgtgtttgtgtacatgtatgggtgtatgcaccctcttctaaggtttccaaa 190543
gttgatcatcatgattatattctgtaagcacttcagctctgatcactcccgccccccccc 190603
cacacacacagttaatcacaacgtttttatttttttccttttattgaaatagaatttttt 190663
aaaatcacataatatactatgattatggtgtttcttcccgctactccttctagttcttcc 190723
cccatcttaccccatctggatccaccccttcctgtctctccttggaaaacaaacagacat 190783
ttaagggaaaataaaataaaataaaataaaataaaatgataaaacaaaatggacacatca 190843
gaatagtataaaacaaacagaaggaaaagagaccagaaacaaaaacaaaaacaaaaccag 190903
cacagaacacagatatagatgaggacacacactcctttgcacactcaggaatcacatgaa 190963
acactacactagaaaccataatatatatacaaggacctgaggtaaaaaagagagataaat 191023
atctaataaaataaaaacaataaattaaaatttaagatgcccttacatggcattatgaga 191083
caaagaacccccaaagattccactgggtttgttttctgttggccatctactgctgggcat 191143
gttgcctacccttaaaagaagttgacatgagatacccttgagagaaactaaaatttcatg 191203
tgtcaagtggtaatcaattggagactgcttctggtttagggatgggggcatgtttcttct 191263
tctcctttgagctctaggaccctacacaggccctgcacttgttacctcattctctctgaa 191323
tttatatgagcataatttatatggtgaagttcatttagatttacagggacttattttctt 191383
agtgttctccaccccctctggatcttataatctctatttcctctttcttggggtactctg 191443
agccctgagggtagagatttgatgggagtattctgcttagggctgaagtctctcattttc 191503
tgcataatgtctggctttgggtctctatggacatagcagaatgtcatttttttactagtg 191563
ttttatctttcttttttcttttccttctcctcctccttttttgagattagtagtatttgt 191623
ttttaccttaggtccctgagctatctagtctcaagtttctgggcaaccaagcagtggggt 191683
ttcatctcgtggagagggccttgagttaaatcagatacctgtcggttactttcacaagct 191743
ttgaatgccactattgcccagccatttattctatacctaaccactgttcctctacagatt 191803
ttagcttggttattattgacttaaaagctagtagccacatataagtgaatacattcagta 191863
tttgtccttctggttctgggttatcttattgtagatcttttttttttctaatttaatcta 191923
tttacctgctaatttcatttttgaacagttgagtaatactccactgtttaagggtaccac 191983
aatctctttatttatccatctgttgaggaatatctaggttgtttccagtttctggctatt 192043
ataaatagactagcaatgaacatggttgagcactgccagtgtgtgaaggtcaatatgaca 192103
tttaagctgtagtagtgtttcttcttttatgaacttggatgccttgtgtttgtgcataaa 192163
tgttaagaactgcaatgtccttgtttttagtagctgagtagtattcttttgtgtaaatga 192223
accacattttcttttccattcttgagttaaaggacagattatttcaagtttctggctatt 192283
atcaataaagctactgtgaacatagttgagcaagtgtccttgtgggatggtggaacatct 192343
tttgggtatatgcccaggaatggtagagctgggtcttgaggtagaactattcccaatttt 192403
atgagaaacagccaattgatttctcgagtggttgtacaagtttgcattcccaccagcaat 192463
gtaagagtgaaccccttgctcgacatcctcaccagcatgtactgtcccttgagttttttg 192523
atcttagtcattctaatgggggtgaggtgggacctcagagttgtttcgatttgcatggag 192583
tgaatggccaacaaatgattggcccaaattgagacctcacagaaatggtttgaacatatt 192643
tctggtttgccatgttctctttcttttccacttcccctctgtctgttctgcatattgaag 192703
caaaggcctagtgtatgcaaggcaagccctctatcaatgagctgtattcccagtgtttgt 192763
cttaattcacttaggataatatattcaaggtttatccatgctgtagttaataattccctt 192823
ctttgggacccaaagagtatctattatatgcatacacagtggttggcctattcatgtgca 192883
caacaggttgtgtccacctgtttgttgtgagtctgctacacgtgcttgtgcattttcttt 192943
tgagtctttaaaaactatcttggagtctatgctccacagtgggtcacatggtaactatgt 193003
tgttattattgtttgaggagctgctgggcttcttctcacagtagctatgacaacttgcct 193063
ttctaccatcaatggaaaaaagactccattttctccatagcctcagcaatcgtctcagtt 193123
ttgtttgttgtttgcttatgatcatcctaatgaataccaaaccacatctaattgtggttt 193183
cgcatttccctaatgactagtgatattgagtgtctactcacgtacttattagacatgttt 193243
gtatattttcctcggaatcctctgctcatttttaattagactgattgttgaacaagagac 193303
ttgttttaaactctgtctagtaagactggcacctattccctgtgtgtttttaggattctt 193363
gcgtcaattaagcttccattttgaagtcaatgtggacactgtcttgttcattagcatgaa 193423
ttatgaatttctaatgaaatgtaggtgtatgaaaaaataatcaattctcttcaatttgac 193483
agattgggtctgagtcaggagtttaggtcttttctgggcctgtttgtgacttttaaaatt 193543
atgacatttttaataattattagagaatttcattcatgcgtacaaagtttttttcattat 193603
atacaccccatatttcccccaacttttttcagactgcttttatcccctccctaatttcag 193663
gccattattatttttataacctacagagtctaatttgtgctgcccatatatctatggata 193723
ttgggccatccataggatcacggccaacctaccagaggccacacccttaaataaaattga 193783
ctctgtctctccaagcagcccttcctgtcagtagctcctcagctgttgctaggggcttgt 193843
gatccctctacctccgtgctagagtttcaaccagcttgctctattgcaggtctagtgtag 193903
gtaccatagcttcagggagttactgcatgcagcaggctcgctgtgtgctaagtccttgtt 193963
ttaccccagtcctccccaacctctggctcctatagcattcaggccccctttctgtcatgt 194023
tccctgagtcttgacgggaaggaatatgatgtggactcagcatttaggactgagccctct 194083
acagaaattctctctgtacttcaacacagttgctgttttaagcactgttcactgctgaaa 194143
gcaacttctctgatgaagtaatatagatagaaattgaaggaacagcatgatattatccat 194203
ttagcaaaataatagttgtaggtcacccctgggttctgtcttcacagccctgggttctta 194263
gtcagatttacagtctcaaacattcagagtttggagcagtaagaatggagttgattgccc 194323
gtacatcattcataccatgaatagactcaaggatgaatcgctatctttttttaaaagaaa 194383
tatttttttttatgtgtatgagtattttgcctgcatatatggaagtacgctggctgagtg 194443
cctggtgcctgcagagaccagaaatggggagccagattcccctgaacttgatgttacaat 194503
tgtaagctaccatttgggtattggaatctgaacctcagccctccgcatggacagagtgct 194563
tttaatggctgagccatctctccaggccccaaataggattcttccatcctgatttatgtt 194623
tttactttcatttttaatttaattcattttatatgaatggtgttattcctgcatgtatgt 194683
ctgtgcgccatgtgtatatcgtggacatatcttgccaaattagtcattactagagttgaa 194743
ggggtttgcagctaggtaatgctggtgctgacttttctctcacagaaatcttcccatact 194803
ataaaacctagacagcaagggagagccccccctccccccaagttcatatctccacgtcct 194863
gggaccaaagtgtgtattgtcttcagcaatagagacttaccatcaagttctaatggtcaa 194923
ccaagagcaacagcaatagtttgccttgtttgggggcttaggggacaattctgaccaaca 194983
acttgggaggaggtattccacaccaggcactgagctttttatttggtttctggaggggag 195043
gttaatactctgtgtagggtaattacaattaaattcttttatatgaatatgtacacacac 195103
acacttacatacattataagatatatttccatatggctttttcaaatatccctcccttca 195163
accttcctctgtgtgtgacatttaagatctcacacacaaatatacacaaaagcacaccac 195223
aaacacaccacacatgagagagagagagagagagagagagagagagagagagagagagag 195283
agagaaagagagagttgaacttttacttgctccaaagactctaacctcagcttccaggag 195343
ccttaacaagagaattgtatatccacaatttctcactccaagtacgtgttgctcttattt 195403
tctccaacactcctgagtaagagacgaatgcttactccgtcattatgggctagaccagtg 195463
ccatctgtaggtctcctctctgcgtgggtgggaaatgtatcaaacatggaaatttcctac 195523
cattctggaggtggatttttcttgacagtgtgtttgactaattgctgttgtccttgatgg 195583
gttttctagaatgcgcataaacttattttaggcagtttgatgttgctattgtttcatgtg 195643
tttccatgggggaagcaagggctgaaaaaatttaatctttggtttgttgatgccactcat 195703
caaataggatttttaatgaaaactttttttaatgctttctttgctgatttttattttttt 195763
aaatttttaatttaattttattatttttattagatactttctttatatacatttcaaatt 195823
tcaaatgctatcccgaaagttccccataccctccccccccatcccctacccacccaccct 195883
acccacccactcctacttcttggccctggcgttccctgtactgaggcatataaagtttgc 195943
aagaacaatgggcctctctatccactgatagccaacgagaccatcctctgatatgtatgc 196003
agcaagagacacgagctccggggggcactggttagttcatattgttgttccacccatagg 196063
gttgcagttctcctcatctccttgggtactctctctagctcctccattgggggccctgtg 196123
atccatccaatagctgactgtgagcatctacttctgtgtttgccaggccccagcatagtc 196183
gcacaagacacagctatatcagggtcctttcagcaaaatcccgctagtgtatgcaatgat 196243
gtcagcgtttggaggctgattatgggatggatccccggatatggcagtctcagttccaaa 196303
cttcatctctgcaactccctccatgggtgttctactctcaattcttaaaaggggcaaagc 196363
atccgcaccctggtctttgttcctcctgagtctcatgtgcttcacaaattgtatcctata 196423
tcttgggtagtctaagtttctgggctaatatccacttatcagtgagtacatatcatttga 196483
gttcttttgtgattgggttacctcactcaggatgatgccctccaggtccaaccatttgcc 196543
taggaatttcataaattcattctttttaatagctgagtagtactccattgtgtaaatgta 196603
ccacattttttgtatccattcctctgttgaggggcatttgggttctttccagctcctggc 196663
tattagaaataaggctgctatgaacatagtggagcatgtgtccttcttaccagttggaac 196723
atcttctgggtataagcccaggagatgtattgcaggatcctctggtagtactatgtccaa 196783
ttttctgaggaactaccagactgatttccagagtggttgtacaagcttgcaatcccatca 196843
gcaatggaggagtgttcctctttctccacatcctcgccagcatctgctgtgacctgaatt 196903
tttgatcttagccattctgactggtgtgaggtggaatctcagggttgttttgatttgcat 196963
ttccctgatgattaaggatgctgaacactttttcaggtgcttctcagccattcagtattc 197023
ctcaggtgagaatcctttgtttagctctgagctacgttttttaatggggttatttaattt 197083
tctggagtccaccttcttgagttctttatatatattggatattagtcccctatctgactt 197143
aggaaaggtaaagatcctttcccaatctgttggtggtctttttgtcttattgacagtgtc 197203
ttttgctttgcagaagctttgcaattttatgaggtcccatttgtcgattcttgatcttac 197263
agcacaagccattggtgttctattcaggaatttttcccctgtgcctatatcttccaggtt 197323
tttccccactttctcctctataagttccactgtctctggttttatgtggagttccttgat 197383
ccacttagatttgaccttagtacaaggagataggaatggatcaatgggcattcttctaca 197443
tcataatcaccagttgtgctagcaccatttgttgaaaatgctgtcttttttaaactggat 197503
ggttttagctcccttgtcaaagatcaagtgatcataggtgtgtgggttcatttctgagtc 197563
tttaattctattccattggtctaactgtctgtcgctatgccaataccatgcagtttttat 197623
cacaattgctctgtagtacagctttagatcagtcatggagattccaccagaggttctttt 197683
atccttgagaagagtttttgcgatcctaggttttgttattccagatgaatttggagattg 197743
ccctttctaatttgttgaagaattgagttggaattttgatggggattacattgaatctgt 197803
acattgcttttggcaagatagccatttttactgtattgatcctgccaatccatgagcatg 197863
ggagatctttccatcttctgagatcttcttcaatttctttcttcagagacttgaagttct 197923
tatcatacagatctttcacttccttagttagttagcgtcataccaaggtattttatatta 197983
tttgtgactaatgtgaagggtgttgtttccctaatttctttctcagcctgtttatccttt 198043
gtgtacagaaaggccattgacttgtttgagttaattttatatccagctacttcactgaag 198103
ctctttatcaggtttaggtgttctctggtggaatttttagggtcacgtatataaactatc 198163
atatcatcagcaaaaagtgatattttgacttccttttttccagtttatatccccttgatc 198223
tccttttcttgttgaattgctctggctaggacttcaaggactgcgttgaatagataggga 198283
gaaagtgggcagccttgtctagtccctgattttagtgggattgcttccagcttctcacca 198343
tttactttgatgttggctactggtttgctgtagattgcttttgtcatgtttaggtatggg 198403
tcttgaattcctgatctttccaagacttttatcatgaatgggtgttggattttgtccaat 198463
gctttctccacatctaatgggattatcatgtgggttttgtctttgagtttgtttatatag 198523
tggattacgttgatggatttccgtatattaaacaatccctccatccctggaatgaaacct 198583
acttggtcaggatggatgattgttttgatgtgttcttggattcagttagtaagaatttta 198643
ttgagtatttttgcattgatatttataagggaaattggtctgaagttctctatctttgtt 198703
gggtctttttgtggtttaggtatcagagtaattgaggcttcatagaatgaattgggtaga 198763
ataccttttgcttctattttgtggaatagtttgtgcagaactgaaattagatcttctttg 198823
aaggtctgatagaactctgcactaaacccatctggtcctgggcttttttttttttttttt 198883
ggttgggagactattaatgactgcttctatttctctaggggatatgggactgtttagatc 198943
gttaacttgatcctgatttaactttggtacctggtatctgtctagaaatttgtccatttc 199003
gtccaggctttccagttttgttgagtatagccttttgtagaaggatctgatggtgtttcg 199063
gatttctttagggtctgttgttatgtctcccttttcatttctgattttgttaattaggat 199123
gctatccctgtaccctctagtgagtctggctaagggtttatgtatcttgttgattttctc 199183
aaagaattagctacttgtttgcttgattctttgaatagttcttcttgtttacacttggtt 199243
gattatgcccctgagtttgatttgttctagagcttttaggtgtgttgtcaagctgttagt 199303
gtgtgctctctctagtttctttttggaggcactcagagctatgagtttccttcttagaaa 199363
tgctttcattgtgcctcataggtttgggtatgttgtggcttcattttcattaaactctaa 199423
aaagtctttaatttctttctttattccttccttgaccaaggtatcattgagaagagtgtt 199483
gttcagtttccatgtgaatgttggctttctattatttatgttgttattgaagatcagcct 199543
tagtccatggtgatctgataggatgcatgggacaatttcaatatttttgtatctgttgag 199603
tcctgttttgtgaacaattatatggtcaattttggagaaggtaccatgaggtcctgagaa 199663
gaaggtatatccttttgttttaggataaaatgttctgtagatatctgttaaatccattta 199723
ttgcataacttctgttagtttcactgtgtccctgtttagtttctgtttccactatctgtc 199783
cattgatgaaagtggtgtgttgaagtctcccactattattgtgtgaagtgcaatgtgtgc 199843
tttgagctttactaaagtttctttaatgaatgtggctgccctggcatttggagcatagat 199903
attcagaattgagagttcctcttggaggattttacctttgatgagtatgaagtatccctt 199963
cttgtcttttttgataactttgggttggaagtcgattttattagatattagaatggctac 200023
tcaggcttgtttcttcagaccatttgcttggaaaattgttttcccacctatcattctgag 200083
gtagtgtctgtctttttccctgagatgggtttcctgtaagcagcaaaatgttgggtcctg 200143
tttgtgttcagtcttttagtttatgtgtttttattggggaattcagtccattgatattaa 200203
gagatatttacgaaaagtaattgttgcttcctattatttttgttgtttgagttggcattc 200263
tgttcttgtggctgtcttctcttaggtttgttgaagaattactttcttgctttttctagg 200323
gcgtggtttccatccttgatttttttttttttctgttattatcctttgaaaggctggatt 200383
cgtggaaagaaaatgtgtgaatctggttttgtcatggaatactctgttttctccatctat 200443
ggtaattgagagtttggctgggtatggtagcctgggctggcatttgtgctctcttagtgt 200503
ctgtataacatctgtccaggatcttctggctttcatagtctctgatgaaaagtctggtgt 200563
aatactgataggcctgccttttatattacttgacctttttcccttactgcttttaatatt 200623
ctatctttatttactgtatttgttgttctgattattatgtatcgggaggaatttcttttt 200683
ttgctctaggctatttggagttctgtaggcttcttttatgttcatgggcatctcttcttt 200743
aggtttgggaagttttcttctataattttgttgaagatatttgctggccctttatgttga 200803
aaatcttcattctcatctactcctatcatccgtaggtttagtcttctcattgtgtcctgg 200863
atttcctggatgttttaagttaggatatttttgcattttctttgattgttgtgccaatgt 200923
tctctatggaatcttctgcacctgacattctctcttgcatctcttgtagtctgttgctga 200983
tgctcacatctatggttccagatttctttcctagggtttctatctccagcgttgcctcac 201043
ttggggttttctttattgtgactacttccctttttaggtctagtatgttttttttttttt 201103
tatttccatcatctgtttggatatgtttccctgtttttctttaaggacttctacctgttt 201163
ttttttttttttttgtgtgttttcctgtttttctttaaggacttgtaactctttagcagt 201223
gttctcctgtatttctttaagtgagttattaaagtccttcttgatgtcctctaccatcat 201283
catgagatatgcttttaaatctgggtctagcttttcaggtgtgttggggtgcccaggact 201343
gggtgaggttggagtgctgcattctgatgatggtgagtggtcttcttttctttacatttg 201403
ccttttgccatctgataatctctggagttagttgttatagttgactctggttagagcttg 201463
ttcctcttgtgattctgttagcctctatcagcagacctgggagactagatctctcctctg 201523
agtttcagtggtcagagcactggaaaggtgcacagatatatggcgttaggacttccctcc 201583
tggcaaaagacgaaggcccgaaatagggcctgtcccagaagctgttagcttctgtagtcc 201643
acactctcacctgtgcagactagtctcagagggatccaggaaccaagatggctcccccag 201703
gtgctctggcaaagccctccagggcggggaggacacctctcctctggcagggaaggtgcc 201763
cagatgtctggagcccaaaatggggtctgcctcagaagctgtcctctagggaccattggg 201823
gtgtctgccaactctgagtccaggtgacccggtgctggcgccgatcgaccggaagggact 201883
tgtgaccctggtcaggccgggttttctgcttccctaatgctgactcaggtcccgagagat 201943
tggaatggaacgcaagttgtgttccactcaccggtggtcctaagattgtgtggagggtcc 202003
tctagggaccttgggcatgtccaccgactccacacccaggtgacctggtgctggtgctga 202063
ctggaaggctttactgatttttcaaggtggtattttggaatctctgaagcttgaaaccat 202123
gaaggtaacaggaaactctctctctaggaagcaaagaggacttggagaattaggaatttg 202183
gaatttggaaaaaaaaatctattttttgtcttcgacaaggtccttagtcaaaggatggat 202243
gtgagagctatggggtcacagaagagtttgttctcttcttccaaagaatttgataatcca 202303
taaatacactcttaaaatcaggcaggacatgtaatgagtccgttgtctcatgagaaaata 202363
aatcttaataaatataaatttcagctgggcagtggtggtacatgcctttaatcccagcac 202423
tctagaagcagaagcagtcggatctctgtgagttcaaggccagccgggtctacagagttc 202483
cacgatggcgatgtctacacagtgaagccttgtctcaagaaaaacaaacaaacaaacaaa 202543
caaacaggtattttggccagcactcttctccctctagaccatgcatgccacagctcctgt 202603
cctcactggatgatgattttgtaactcagaacaggcctggcttccctcttgttcactagc 202663
ctgccccgtggtactagagtgcttccttgagcgtgctggatgttcagtagaatgggtgaa 202723
ttggaggaggttgttgcctataacatgaggtgggaaataaggacttatctttttaaagct 202783
ctataaacttcatcgtgaaacacaacacacaggagtgaaaaaggtcagtcataattgggg 202843
ctctgtgagtctttatcaagtaaatgtacctgtgtaaccagcttctagaggcagaagcaa 202903
gatgatcaggactccagaagcagaattctccccagtccatgttctctcttggtcatgatt 202963
tgccaacaaaccttatccttccctctgaaggataactgccgtgacttcccgaatctcagg 203023
cttcatttattttaaacatctcatgagttaaaataatacaatctgtactcttgtttttct 203083
tccatgattaatattgtatgagttacattcatgaatgtacttttaaaattatttttttct 203143
cctgacatttatcaataccaggcaaaaaccccgtatttaaagcaagccagcttctgatgc 203203
gcatgtgtcgttccttgagcatatgtggcagccatgagcctgagaccagcagcctcacca 203263
gtttcttgagggtagtctagtctagtctccatttatagtctagtcatagtctccatttta 203323
tttataaacaaggagtgtcaggctagtaaataacaaatttgaattaatacaatgatctct 203383
tgaacccacatcccttagtgaactgtgcctaggtttatttaccaccattgtaatttgcca 203443
gacctgggcaggaggactccactaaactattttgagaggctgtgcacagaagtgatgtag 203503
tgggagatgggctggtttaaagatggctgtcctgtggctacctgtagcactatgaaagtt 203563
tcccggggcctctctgcaatttgaactgtgtatgaagacgtctctggacccattgttcaa 203623
ggatgattcagggctttagagcccggaaggagaggacttggcctggcctccgcatcacag 203683
aggagggtgtcaggatacattcaggaaggactggttccagccatgtcctggttttctgtg 203743
agccctgaccatcacagggcacccacccagctcggggtcagcttcgccacagctgttatc 203803
aatttcttccctggaggttgatggccttgctttgaatcgccccaagtgcaaagtgaattc 203863
............................................................ 134226
TypePoint1Point2Orient1Orient2CuratorCommentTimeIdAlignmentReleases
Switch Points
A203863134225+-chenhcTaxid 10090 chrom 3 Primary assembly 16:51:04.300566347736GRCm38, MGSCv37
IdTypeDateWhodidComment
12996ImportOldDb09/06/:00f_old_db
12997ReSetShortOvlp09/04/:48dbo
167391CreateSwitchPt11/20/:04chenhctpf_builder 1.6
Toolkit wrapper version: built Nov 19 2008 using /netopt/ncbi_tools64/c++.by-date//GCC401-Release64/lib
Accession%idPosition (strand) Accession%idPosition (strand)
C3H-15E21&AC99.87%pos 37605 (F-) C3H-186B5&AC99.66%pos 108929 (F-) C3H-199J5AC99.38%pos 20913 (R-) &CH29-11H23&AC100%pos 52554 (F+) CH29-30L4&AC99.87%pos 78427 (F+) CH29-488G1AC99.77%pos 142211 (R-) &CH29-538D24AC99.09%pos 6773 (R-) &CH29-547H24AC99.74%pos 9562 (R-) &CH29-617L24AC99.66%pos 98478 (R+) AC100%pos 39649 (F+) CH29-8D19&AC99.85%pos 113257 (F+) RP23-79N10&AC99.33%pos 126485 (F-) RP24-116G22&AC99.84%pos 71545 (F-) RP24-124D10AC99.23%pos 66449 (R+) &RP24-166M10AC99.1%pos 13682 (R-) &RP24-177N12AC99.73%pos 36553 (R+) AC100%pos 121702 (F+) RP24-229H17AC99.48%pos 54448 (R+) AC100%pos 108463 (F+) RP24-289J19AC99.84%pos 9526 (R-) &RP24-339I9&AC99.19%pos 180667 (F-)
Fosmid Ends
Accession%idPosition (strand) Accession%idPosition (strand)
WI1-1053N23AC99.14%pos 20542 (R-) &WI1-1101I24AC99.83%pos 105644 (R-) AC99.6%pos 69317 (F+) WI1-1329A11AC100%pos 52478 (R-) AC100%pos 8912 (F+) WI1-1357J23AC99.71%pos 65534 (R+) AC99.65%pos 102072 (F-) WI1-136I8AC100%pos 192869 (R+) AC100%pos 107920 (F+) AC100%pos 145220 (R-) &WI1-136N10AC99.41%pos 192870 (R+) AC100%pos 107929 (F+) AC99.41%pos 145219 (R-) &WI1-1374B17AC99.71%pos 36460 (R-) &WI1-1400K24AC99.6%pos 107640 (R-) &WI1-1471G20AC99.84%pos 87046 (R-) AC100%pos 40884 (F+) WI1-1521P14AC99.18%pos 108907 (R+) AC100%pos 148081 (F-) WI1-1526F20&AC99.76%pos 37812 (F+) WI1-1567J17AC100%pos 54040 (R+) AC100%pos 94040 (F-) WI1-1612J1AC100%pos 45726 (R+) AC100%pos 84573 (F-) WI1-1623G10AC100%pos 76261 (R+) &WI1-1627G10AC100%pos 31654 (R+) AC100%pos 73553 (F-) WI1-1654P3AC99.41%pos 83107 (R+) AC99.69%pos 119720 (F-) WI1-1658G6AC99.67%pos 36021 (R-) AC99.85%pos 950 (F+) WI1-169L11&AC99.08%pos 32916 (F-) WI1-190E23AC100%pos 157282 (R-) AC99.85%pos 119197 (F+) WI1-1938J8&AC99.64%pos 5419 (F-) WI1-2002D2AC99.71%pos 55674 (R-) AC99.29%pos 16747 (F+) WI1-2004N1AC100%pos 46212 (R+) AC100%pos 83785 (F-) WI1-2022D16AC100%pos 4396 (R+) AC100%pos 43957 (F-) WI1-2050H3AC100%pos 68019 (R+) AC99.48%pos 109513 (F-) WI1-2079C13AC100%pos 58304 (R+) AC99.47%pos 97664 (F-) WI1-2087A3&AC100%pos 143034 (F-) WI1-2154J16AC99.3%pos 5275 (R+) AC100%pos 44805 (F-) WI1-2162I19&AC99.58%pos 1701 (F-) WI1-2190F13AC100%pos 72831 (R-) AC99.82%pos 35827 (F+) WI1-2201C11&AC99.43%pos 154492 (F-) WI1-2229C7AC100%pos 111497 (R-) AC99.28%pos 69346 (F+) WI1-2268A17AC99.47%pos 94654 (R+) AC100%pos 134307 (F-) WI1-2270K2AC100%pos 21906 (R+) AC100%pos 59766 (F-) WI1-2368A1AC99.15%pos 103737 (R-) AC99.6%pos 64560 (F+) WI1-2568O23AC100%pos 21218 (R+) AC100%pos 57774 (F-) WI1-2680O7AC99.31%pos 129167 (R-) AC99.7%pos 90870 (F+) WI1-2689F9AC100%pos 44614 (R-) AC100%pos 5756 (F+) WI1-2843H14&AC100%pos 77536 (F+) WI1-2864M9AC100%pos 15156 (R-) &WI1-406C11AC100%pos 23438 (R+) AC99.64%pos 58421 (F-) WI1-485M22AC99.16%pos 70268 (R-) AC99.1%pos 27257 (F+) WI1-487O13AC100%pos 117715 (R+) AC99.6%pos 157990 (F-) WI1-526C14AC99.49%pos 76528 (R-) &WI1-565H15&AC99.76%pos 4900 (F-) WI1-62O10AC100%pos 3325 (R-) &WI1-673H12AC100%pos 113561 (R-) AC100%pos 73650 (F+) WI1-700F4AC99.82%pos 4795 (R-) &WI1-70E2AC99.79%pos 89975 (R+) AC100%pos 128738 (F-) WI1-755M5AC100%pos 133598 (R-) AC99.84%pos 91942 (F+) WI1-806C17&AC99.84%pos 12465 (F-) WI1-850M3&AC99.62%pos 176790 (F+) &AC100%pos 176760 (F+) WI1-857N12AC99.78%pos 15057 (R+) AC100%pos 56010 (F-) WI1-920H19AC99.71%pos 100951 (R+) AC100%pos 138896 (F-) WI1-996H12AC99.82%pos 26234 (R-) &
hAT-Charlie
hAT-Charlie
hAT-Charlie
hAT-Charlie
hAT-Charlie
hAT-Charlie
hAT-Charlie
hAT-Charlie
hAT-Charlie
hAT-Charlie
hAT-Charlie
hAT-Charlie
hAT-Charlie
hAT-Charlie
hAT-Charlie
TcMar-Tigger
TcMar-Tigger
TcMar-Tigger
hAT-Tip100
hAT-Tip100
IAPLTR2_Mm
IAPLTR2_Mm
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
TcMar-Tigger
hAT-Charlie
RLTR11C_MM
RLTR11C_MM
RLTR20C2_MM
RLTR20C2_MM
RLTR31C_MM
RLTR26C_MM
polypyrimidine
polypyrimidine
polypyrimidine
MurERV4_19-int
MYSERV6-int
MYSERV6-int
MYSERV6-int
MYSERV6-int
MTB_Mm-int
MTA_Mm-int
IAPEY4_I-int
Low_complexity
RLTR20C1_MM
Simple_repeat
Simple_repeat
Low_complexity
Low_complexity
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Low_complexity
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Low_complexity
Simple_repeat
Low_complexity
Simple_repeat
Simple_repeat
Simple_repeat
Low_complexity
Simple_repeat
Simple_repeat
Simple_repeat
ORR1B1-int
Simple_repeat
Simple_repeat
Simple_repeat
hAT-Charlie
Simple_repeat
Low_complexity
Simple_repeat
Low_complexity
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
hAT-Charlie
Low_complexity
Low_complexity
Low_complexity
Simple_repeat
Simple_repeat
Low_complexity
Simple_repeat
Simple_repeat
Low_complexity
Simple_repeat
Simple_repeat
Simple_repeat
Low_complexity
Simple_repeat
Simple_repeat
hAT-Charlie
hAT-Tip100
hAT-Tip100
DEBUG TEXT!!
CtgOverlap
NcKey: ** 1
Acc1: AC Acc2: AC
Phase1: 3 Phase2: 3
GiPair: 7218
AccPair: 48590
IsSwapped: 1
Self Url: http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/overlap/overlapview.cgi
SelfUrlDir: http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/overlap/
IsPublic: 0
0: NCID_1_.14.18.128_854__0MetA0___S_NC_Overlap_PROD
Seq-align ::= {
type partial,
id str "score",
value int 19500
id str "e_value",
value real { 0, 10, 0 }
id str "bit_score",
value real { 42, 10, -9 }
id str "num_ident",
value int 19500
segs denseg {
CG-AlignmentStats ::= {
total-length 19500,
aligned-length 19500,
adjusted-length 19500,
mismatches 0,
percent-identity { 1, 10, 2 },
contained FALSE,
first-left 184363,
first-right 0,
second-left 0,
second-right 134225
gap-count 0
DOCUMENT_ROOT: /export/home/web/public/htdocs
GATEWAY_INTERFACE: CGI/1.1
HTTP_ACCEPT: */*
HTTP_CAF: 150994
HTTP_CAF_EXTERNAL: 1
HTTP_CAF_PROXIED_HOST: 220.177.198.53
HTTP_CAF_RELAY: {2#21)}futurama2_lb=130.14.22.119:80
HTTP_CAF_URL: http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/overlap/overlapview.cgi
HTTP_CONNECTION: close
HTTP_HOST: www.ncbi.nlm.nih.gov
HTTP_REFERER: /link?url=UOpDv_mhMO6Wtpw_ZCGn8MeuxhHheVznbdm0RHrcrnDc_pI_XweXuExPHLZ_xPig-uRTuzg9HtTlLE-dI1kkniBWKvvEEwpEpyr3jGhxEDIRqJPVwkdy-o0Ew3U5sw15k60GettGTIsv9lyhJ9Lq1aMOJqKurWFhumCRt8TEaH_
HTTP_USER_AGENT: Mozilla/4.0 ( MSIE 8.0; Windows NT 6.0; Trident/4.0)
HTTP_X_FORWARDED_FOR: 220.177.198.53
HTTP_X_FORWARDED_HOST: www.ncbi.nlm.nih.gov
HTTP_X_FORWARDED_SERVER: www.ncbi.nlm.nih.gov
HTTP_X_FORWARDED_URI: /projects/genome/assembly/grc/overlap/overlapview.cgi?acc1=AC&acc2=AC
HTTP_X_FWD_IP_ADDR: 220.177.198.53
PATH: /sbin:/usr/sbin:/bin:/usr/bin
QUERY_STRING: acc1=AC&acc2=AC
REMOTE_ADDR: 130.14.26.13
REMOTE_PORT: 37356
REQUEST_METHOD: GET
REQUEST_URI: /projects/genome/assembly/grc/overlap/overlapview.cgi?acc1=AC&acc2=AC
SCRIPT_FILENAME: /export/home/web/public/htdocs/projects/genome/assembly/grc/overlap/overlapview.cgi
SCRIPT_NAME: /projects/genome/assembly/grc/overlap/overlapview.cgi
SCRIPT_URI: http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/overlap/overlapview.cgi
SCRIPT_URL: /projects/genome/assembly/grc/overlap/overlapview.cgi
SERVER_ADDR: 130.14.22.119
SERVER_ADMIN: webadmin@ncbi.nlm.nih.gov
SERVER_NAME: www.ncbi.nlm.nih.gov
SERVER_PORT: 80
SERVER_PROTOCOL: HTTP/1.1
SERVER_SIGNATURE:
SERVER_SOFTWARE: Apache
Timer: DoPage: 0.
Timer: GetOverlap: 0.
Timer: MakeNetCacheImage: 0.
Timer: SetupTemplate: 0.